Software

  • cbioportalR (Creator & Maintainer) - R package for programmatically retrieving and formatting data from the cBioPortal cancer genomics database.
    Docs GitHub
  • cureit (Creator & Maintainer) - R package for building mixture cure models.
    Docs GitHub Paper
  • bstfun (Author) - Miscellaneous collection of functions
    Docs GitHub
  • clinfun (Author) - R package implementing methods for clinical trial design.
    Docs GitHub
  • genieBPC (Author) - R data-processing pipeline that ingests, standardizes, and streamlines analysis of multi-institutional clinico-genomic data from the AACR Project GENIE Biopharma Collaborative.
    Docs GitHub Paper
  • gnomeR (Author) - R toolkit for processing, cleaning, and visualizing data from targeted genomic panels.
    Docs GitHub
  • gtsummary (Author) - R package for producing publication-ready analytical and summary tables.
    Docs GitHub Paper
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